Scaffold Ga0209190_1003781

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1003781
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9996
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F027417	Metagenome	194	Y
F029678	Metagenome	187	Y
F038999	Metagenome	164	Y
F059896	Metagenome	133	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100378110	F085348	AGGAGG	MQPTGIALKVTGKDGKISYPSYEAYGWERVNAVINGTLALPNVAMVEIEDINGREVA
Ga0209190_100378115	F059896	AGGCGG	MDKCDKCENMARVTVSGFIVAQYLCALHAGQLCESVGDKAGADKFALLVAGDKVLA
Ga0209190_100378116	F038999	GAGG	MTKTQEQGTKLSFPCSCNGCRNYPTRPAEIWHESQIAGKAQGYFFTPDTMRFFKSRIADFKPVGISPRADSLMVIVSNKRDDDPRYYEIVTLCPYGELGREWVKDSDGSPIASYESLYKARKSARWNCTIAAQICDCHGCQLDKAGR
Ga0209190_10037812	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWSINPDSRLTVGIHTRANGAPPFGDPADAGEDEGNNGREA
Ga0209190_10037813	F001477	GGAGG	MSNIYTIHPPKSSLILFYEVTTPEGENEWGGANAEHAIQWLSLAPTGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0209190_10037814	F029678	GGAGG	MSRVTGFTIFNKETGQKLATLPLTIPIGATVEAYERDGQSVGWGWEESNE
Ga0209190_10037817	F000821	GGAG	MNEEYLRAKANLCLNQAEIDLKQEEIAKAIKNLERANSALSRIFNMEEDEKK
Ga0209190_10037819	F027417	GAGG	MQYDYRVTFVTDYLTITTNVELELDDYTGNCSGEAYSQATFNAMNNIKDEIGRIDESIINDITVTLILDDEEIELEGEDE