NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1003551

Scaffold Ga0209190_1003551


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1003551 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10322
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F008071Metagenome339Y
F085343Metagenome111N
F096882Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10035511F096882N/ALKESVRAWRTFEDALKNLESFEACAKWVIDNPQICKKLSGTGLM
Ga0209190_100355110F000635N/AMTLSEIAQFAGEKVGKTDSDTLVFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPASTALDDELRLPHVHHVVLALTHADALERERQYAKAQSVVQAANADLAAMASYELSQVGGVKQITPVSLGDLMTEEITAA
Ga0209190_10035512F085343GGAMLATLVTPTAPICRLDNFFIDMDGFRVETFYMKAILIAMAVLVAPVMAEDEAEMNDFIGGVYRGGGNVHRAGSVIMTEDGLIFKSGSRFIYQDGRVCQHVGSTYIRENNSVVVRVGSAFVSNDGLTEKVGSCYIGPVNSFTAGSTTVRQGWASR
Ga0209190_10035518F008071GAGGMTAMEYVEASGVPESRWPNFKEWFSWYERNNLVGVVKDGEEIVGVAVARALDSTQNIEHYKHDYNSPDAFVDLTVTCIDGKPNANSLLAMKRLLSILWDEFGPRRSLIFNRNGVRKQYDYMKFMRKAMA
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