Scaffold Ga0209190_1002872

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1002872
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11479
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012867	Metagenome	276	Y
F014736	Metagenome	260	Y
F039034	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100287215	F039034	AGGAG	MKAVNLDTDNAGFYAFAAARDARMRAAAMWSHYTSTERTRAERMKLGLELCYSTSAIYINPRNKFIAIKVDKPTVRDRKNLALLEKDYEKLGDITKAVTKQGITYRIAKA
Ga0209190_10028723	F014736	GGAGG	MNMPVVPDHVFKMWNDPRFEILAEVDKLLTGSKTWAGMEYTYHPIHPVKYRPVAEKIRKALDELKREYGVEE
Ga0209190_10028724	F012867	GGAG	MMKDFMYEQQRESITEDWSDEISQPLLSEKLNVPRVSYRIYYSKDNLTRRIFIFRGNCTPAETETMLGLGFIFAKDGDTENIPDQLVEEIEL