Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1002845 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1002845 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11521
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (44.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11521

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (44.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F010673	Metagenome	300	Y
F071018	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100284512	F002227	AGCAG	MKLTIQSRDNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLIAKDGHQILELIIEREEGDRLCPGTPDLETL
Ga0209190_100284513	F001964	GGAG	MSRNLFAKPIYKVQLSGAIGWSDMKERVVSYRTVEFSSRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDIYPTLERPKP
Ga0209190_100284515	F071018	N/A	MSYLENGSTHRSLFRLMPPLHHDADPNRSQVLAYIGENLACDIGRSIRAFNSMRHPKSKVVVFDQVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDTKEMEAPSGDSSIDDLLTKFRNLSEQDGSASKKPSKTKHQPPVNTIESMVAAAWK
Ga0209190_100284520	F003748	N/A	MFTVNRKDAGGSYINAEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATRHNVPDGTEYDFLGVKGSYASFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPMAEVDGDDLDPKPF
Ga0209190_10028458	F010673	N/A	MNPKLIPILERIIARETILLSFHADRLPQSALAYIRQHCLNDNFLWLAPEEQDLIEELPPFADNLSESIRPGGGIGNPDSSVYHLFDDGSLWLKTNAYSSIWSDATDFAVEILLPRMELSRMDADLLRAIEMEDAVESVRADFYSSFAHILNRDCGIPYCDAREHWNAYARQLGDGAREESELGGSESGRKEGIRFASEYTVKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1002845

Overview

Ecosystem & Geography

Associated Families

Sequences