Scaffold Ga0209190_1002614

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1002614
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12083
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F010599	Metagenome / Metatranscriptome	301	Y
F032149	Metagenome	180	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100261417	F010599	N/A	MILLIFFATLSFSFGLSYWATFDKLKKSNLLLAELFIKTRALEELNSQVNNGISMSDDTIHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELRIKGLDNYSDRLLALLPENNTK
Ga0209190_100261418	F032149	GGAG	MKKKIIILILSAISVSIAMNLFFASRLSKLSDLDLFDIEEDDF
Ga0209190_100261419	F045545	GGAGG	MIKQIGLFFICKIKSHSLVDAGSCPFTGKNYAACLRCGATITK
Ga0209190_10026142	F004475	AGGA	MSNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSRGFLKSRRTQKAFEASAAIARGQNEQIDG