Scaffold Ga0209190_1002328

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1002328
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12890
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (97.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F011580	Metagenome	289	Y
F020664	Metagenome	222	Y
F065525	Metagenome	127	N
F096877	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100232816	F004231	AGGAG	MAVKPSDFQHQICVYLEGVGECLVCFDILTPGEELDADHSDDYDIDFAVFDEQDRHITYDISKRHYNYCENKATDEMFDITTAWRKDWEGSV
Ga0209190_100232817	F065525	AGGAG	MYLKTYHKQMLRRLEHKPSALKGFTHGDNNAGNVSVHFENYLNDLQNYGYVMNIEDVWHITGFGLAALHEKKNVATPTKMSNGTTTEFYDGKELKQTCARLGAYDFLKYPSKFGENLRYPKIYV
Ga0209190_10023282	F096877	GGAGG	MKITIEYDDVIEARQAIHAHDVWTALLDINEAMRSHTKHDVSETQTIAHIKEILSDVSQLLYS
Ga0209190_100232822	F020664	GGCGG	MEKQEIKHNLIRFSEKEREIMRTIGGGNLSEGARICVMWGAHFWNLGLNTEMDLKHIGLVTVSTTDQHPHE
Ga0209190_100232827	F011580	GAGG	MTQTQALTKALILALIAPSDEKATQASDLAESIAQGLDFAQVEQCKADALLMLETI