NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1002140

Scaffold Ga0209190_1002140


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1002140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13503
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (89.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014952Metagenome / Metatranscriptome258Y
F022833Metagenome212Y
F049485Metagenome146N
F061649Metagenome131Y
F102396Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100214010F022833AGGAGMATKLQDSLVRKIQENRELKDTIKDLHAQAEKDKQFLREVQDESNNLELALKKCILSKAELNNKVEQLTDDLDKYTELYARATLVVTALGEAVYFLTKESSRG
Ga0209190_100214013F102396AGGMLLFKTKRLERLEQEVVMLEDLFRSALRRIANLEEARWGLKVDGTPKAKPGRKVKNERIS
Ga0209190_100214017F049485GGAMAHSGSQHISNILGSKDIPSLQLWLKKVGASMPDISTVERKIMENQKKAPFVPLEMKGRMTKNSTKKQGSSEPDWKGTFMYQGQVMTFGAWENDAGFGVYYNIKLNDPNWNKQQQQYPKEVQAKSYPKDSDVPF
Ga0209190_100214027F014952AGAAGGMANNIPFQAQGKTTRINATTTANTVSVLSDSPCNQVRIHNGTAAEVFVRLGTASTDDVVIPVAGTPAYGIVIHNNQTVIFTAPKQATNTASLYVSVIVATGTGAIYVTPGEGTI
Ga0209190_10021406F061649GGAGMRDQTDCHYPYLSLCLRDCEEGCRMRKTVWRKRTIRELQDQELEDEAFRKIPQYDYECKHLGICNDRPTHCLDCPSNNT

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