NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1001744

Scaffold Ga0209190_1001744


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1001744 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15045
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (64.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F005562Metagenome / Metatranscriptome396Y
F071244Metagenome122Y
F084244Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100174413F005562AGGMTRPNIQIDDEVREMTEEEYAELLESGWTEGTDETPTAD
Ga0209190_100174416F004670AGGAMSRMKDYLLEDLPLFRATDPDTSRQVKPMRFNSQRAILLAIYADAILGLTDEEAAARATDKGHTINGYWKRCADLRTQGLIHDLGIRRTLSSGSQGMVCAITQLGLDVARGCHD
Ga0209190_100174419F005027AGGMETSTGELIAKLTNISMNLALELRFKEASVIMEAVGALHALPNIAETIRDSWHPSLNNSGPSKGISYLSSAKMVAADE
Ga0209190_10017446F071244AGGMYTIISERIGTPGDKFVPSEETNIEALIQGGFIKSDKSPTKSDKTVETSPEE
Ga0209190_10017449F084244N/AMPNVIEVVGLKEALKELNTMDKKLRREITRDFKKIVQPVLGKAESMLPNGAPLSGMSRSWIGKSGADIMSWNDARVRKNIKAFTSGKKVRDAPGGFKQNLGVFGIRWLGPQATTLDMLAKGVMADNLTDRFGPPSRIIYKAYDSASDEVQQQVKDLVNKVMKLTNNAMRI
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