Basic Information | |
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Taxon OID | 3300027736 Open in IMG/M |
Scaffold ID | Ga0209190_1001470 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16415 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (93.18%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000652 | Metagenome / Metatranscriptome | 959 | Y |
F004978 | Metagenome / Metatranscriptome | 416 | Y |
F010760 | Metagenome / Metatranscriptome | 299 | Y |
F018539 | Metagenome | 234 | Y |
F019477 | Metagenome / Metatranscriptome | 229 | Y |
F022648 | Metagenome / Metatranscriptome | 213 | Y |
F041568 | Metagenome / Metatranscriptome | 159 | Y |
F072324 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209190_100147010 | F041568 | AGGAG | MFSTDNQRELNVAINVMYEDQGAAFTSGYLNSMAQEMLALLPKRKQKEFIKGVEKFNGRQLITVKNCLTGVEVEIRREDRGGPCDPSTERFHSM |
Ga0209190_100147017 | F000652 | AGAAGG | MKAYVTTILRQEIEVPEGTSREDVLEFLAENQSFGDAFLGVSDMTQQFRIVGITVLDEEITELGEESFDA |
Ga0209190_100147020 | F010760 | AGGAG | MLDISKIVKTYSGKIGCMCGCLGKYSYTADGAENHGPGYNVDNSVNERSVKIIAKKVLTNPNVQWDGNIAYVEDRVGNRMQAIYFKETV |
Ga0209190_100147021 | F004978 | AGGAG | MITADKLVLLTNMPAAMLTMCAQDAGYKGPEFSSCKFIGITNGGQFCYQAVYHVKGGTDSTKIFLTYDPTEDQVIADYHLTEVF |
Ga0209190_100147036 | F022648 | AGGAGG | MIVHNVQVHPIYAGHINDHKVIREEEFNTREDALMWAESYNRHRDVWNINGWLENGNGFVAVYTGAIDTVSGENL |
Ga0209190_100147038 | F019477 | AGGAG | MSTWEFAEFRIGRLFHCNGNDYIKQSTRTARMLSNGRIFYFGKREVIHAIAW |
Ga0209190_10014706 | F072324 | AGGA | MLQVTKTSDNSYHAVNNDVNNCEAIVFAESVRTGRTMLQVINYVLEEDDSDTNLLCACETLQETIINTYKKQIISEYLDLALYNINNA |
Ga0209190_10014707 | F018539 | AGGAG | MLKSAFNTLAKAKLIYNKKRELYKVVVAFNVHTKIKDNGEIVHLFPTQAKCAYVSGDINYEELQKEVQRITETAKLQLRTNNIEFV |
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