NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209190_1001470

Scaffold Ga0209190_1001470


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1001470 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16415
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (93.18%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F004978Metagenome / Metatranscriptome416Y
F010760Metagenome / Metatranscriptome299Y
F018539Metagenome234Y
F019477Metagenome / Metatranscriptome229Y
F022648Metagenome / Metatranscriptome213Y
F041568Metagenome / Metatranscriptome159Y
F072324Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100147010F041568AGGAGMFSTDNQRELNVAINVMYEDQGAAFTSGYLNSMAQEMLALLPKRKQKEFIKGVEKFNGRQLITVKNCLTGVEVEIRREDRGGPCDPSTERFHSM
Ga0209190_100147017F000652AGAAGGMKAYVTTILRQEIEVPEGTSREDVLEFLAENQSFGDAFLGVSDMTQQFRIVGITVLDEEITELGEESFDA
Ga0209190_100147020F010760AGGAGMLDISKIVKTYSGKIGCMCGCLGKYSYTADGAENHGPGYNVDNSVNERSVKIIAKKVLTNPNVQWDGNIAYVEDRVGNRMQAIYFKETV
Ga0209190_100147021F004978AGGAGMITADKLVLLTNMPAAMLTMCAQDAGYKGPEFSSCKFIGITNGGQFCYQAVYHVKGGTDSTKIFLTYDPTEDQVIADYHLTEVF
Ga0209190_100147036F022648AGGAGGMIVHNVQVHPIYAGHINDHKVIREEEFNTREDALMWAESYNRHRDVWNINGWLENGNGFVAVYTGAIDTVSGENL
Ga0209190_100147038F019477AGGAGMSTWEFAEFRIGRLFHCNGNDYIKQSTRTARMLSNGRIFYFGKREVIHAIAW
Ga0209190_10014706F072324AGGAMLQVTKTSDNSYHAVNNDVNNCEAIVFAESVRTGRTMLQVINYVLEEDDSDTNLLCACETLQETIINTYKKQIISEYLDLALYNINNA
Ga0209190_10014707F018539AGGAGMLKSAFNTLAKAKLIYNKKRELYKVVVAFNVHTKIKDNGEIVHLFPTQAKCAYVSGDINYEELQKEVQRITETAKLQLRTNNIEFV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.