Basic Information | |
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Taxon OID | 3300027736 Open in IMG/M |
Scaffold ID | Ga0209190_1001065 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19457 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (75.61%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004344 | Metagenome / Metatranscriptome | 442 | Y |
F016152 | Metagenome / Metatranscriptome | 249 | Y |
F061843 | Metagenome | 131 | N |
F072102 | Metagenome | 121 | N |
F077222 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209190_100106510 | F004344 | AGGGGG | MDGLSLKIKTNDGVDSVFSLRPRTIVAFEQKFGKGLAKLFSEDQKMEHIYFLAWQSLKDNGRVVKPFGPEFLDTLESVEMVSDPNLESTEIA |
Ga0209190_100106511 | F016152 | N/A | VELGISPIDLIDAPDGILEAMFAYLKERAKANKYG |
Ga0209190_100106512 | F072102 | AGG | MADEVIVLTGIKETMDALKQFDKAAARKFNKVINDQLNSAERSADNLVVQFTNPVYGTPMRGWRKTSAARPRTRGGAGWPAWDVSTIQAGIVKSRAQGKVRGDYTTSAGALINKSAAGAIFEVAGRTGNASKNQFIRYLSNSFGKASRLIWAVVDKDKDEIQRRVAAALEDAKKTLQTNLNGRS |
Ga0209190_100106530 | F077222 | AGGA | VKILWIVLTVLAAVGKGRRALPWAILAYFGGWVALGVVCLTRQRPLRPVPPWMLNLGYQSQAKRAFARIDTPKDLLG |
Ga0209190_100106538 | F061843 | AGG | MSDETWSDIFKIFITNNGSYHLYLEEQEACVDLIENVTDEIEVTDFAEMKKSSAADLRDDFATMRLDSIRKNMPPMALKIATLTERELLDLAQEIIQVVQNKNKIRLEIVK |
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