NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1001065

Scaffold Ga0209190_1001065


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1001065 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19457
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (75.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F016152Metagenome / Metatranscriptome249Y
F061843Metagenome131N
F072102Metagenome121N
F077222Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100106510F004344AGGGGGMDGLSLKIKTNDGVDSVFSLRPRTIVAFEQKFGKGLAKLFSEDQKMEHIYFLAWQSLKDNGRVVKPFGPEFLDTLESVEMVSDPNLESTEIA
Ga0209190_100106511F016152N/AVELGISPIDLIDAPDGILEAMFAYLKERAKANKYG
Ga0209190_100106512F072102AGGMADEVIVLTGIKETMDALKQFDKAAARKFNKVINDQLNSAERSADNLVVQFTNPVYGTPMRGWRKTSAARPRTRGGAGWPAWDVSTIQAGIVKSRAQGKVRGDYTTSAGALINKSAAGAIFEVAGRTGNASKNQFIRYLSNSFGKASRLIWAVVDKDKDEIQRRVAAALEDAKKTLQTNLNGRS
Ga0209190_100106530F077222AGGAVKILWIVLTVLAAVGKGRRALPWAILAYFGGWVALGVVCLTRQRPLRPVPPWMLNLGYQSQAKRAFARIDTPKDLLG
Ga0209190_100106538F061843AGGMSDETWSDIFKIFITNNGSYHLYLEEQEACVDLIENVTDEIEVTDFAEMKKSSAADLRDDFATMRLDSIRKNMPPMALKIATLTERELLDLAQEIIQVVQNKNKIRLEIVK
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