NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209190_1000539

Scaffold Ga0209190_1000539


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000539 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27640
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021520Metagenome / Metatranscriptome218N
F026250Metagenome / Metatranscriptome198Y
F036672Metagenome / Metatranscriptome169N
F041731Metagenome159N
F103159Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100053927F036672AGGAMKFWGEFHALIWTIAASVTTILTLSGTLQQIVIWLTLAALVLHFIGAFTNKDNN
Ga0209190_100053931F103159AGGAGGVGKFLSEIKGQPVGNSGSIDSILAKLGETDGRDLLDALNDPNIRPTQIIKALQARQIKLSPSVITRYRAANVTTQ
Ga0209190_100053933F021520GAGGMSHNEMRTMVVVRWHDAHSATDTWTPIDDIGTDPCEVVSCGFLLPTSDGGKEDHITIFQSKTDADDVDGVLCIPVAMVQDMKVMTKNIPGLAPSK
Ga0209190_100053935F026250AGGAGGMTNRQKQIGTVIGMGILWGFWLMPTAEDLPDAQPATPLEWKLFIALNFAAIIYLHILNVREHQLQIRKEAQQRYWERMETRSRNNHPTAK
Ga0209190_100053939F041731N/AMNSIEGRDLDQTGDEQAVTYIRERLNSIQGADRARMAMLITQAELAGRSISLKETKSLRRFEIARGLFLLFDSGQFDEDLVKDICSQITSQKYTKPGEALANLDVKQAQRFANACHGIARDLLNLIYIPETNQFHIEEQAS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.