Scaffold Ga0209190_1000329

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000329
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34677
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.24%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F005114	Metagenome / Metatranscriptome	411	Y
F011078	Metagenome / Metatranscriptome	295	N
F014117	Metagenome / Metatranscriptome	265	Y
F021301	Metagenome / Metatranscriptome	219	N
F026270	Metagenome	198	N
F031025	Metagenome / Metatranscriptome	183	N
F038673	Metagenome / Metatranscriptome	165	N
F039104	Metagenome / Metatranscriptome	164	Y
F045761	Metagenome	152	N
F068841	Metagenome / Metatranscriptome	124	N
F072093	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100032920	F011078	N/A	VNKAEIIEELARADWLTKATRNIAKNNELARELYQFYFLTILQKPDEQIEKIYNDGYIQFWTIRLLYLCINGNRHPFGESRIYDQYDVYDLHLSEEPDLLLEREEDEKIEQKRINKINQVTEEAYFYERELFKLWCSGMSARAIHRQTDISVREILRVVKLMKERCTTK
Ga0209190_100032927	F039104	N/A	MTKIKALVVRASINNIIKWRVYFAGELLATFENETDAIYYANFIDRQ
Ga0209190_100032928	F045761	N/A	MIQNYLIIGMAILFVITLLQLHKTTEREDELLETISNKNRLIWDYETELLEIRSKIAEANDRAKTWELQANFLKELNNDKNQSTRGKSINK
Ga0209190_100032934	F068841	GGAGG	MIELAINGWILTVKGRICEEKYVYTIEAVDNWLINNHFDELKDYANYRQVGFGDCVTKEFDGINSEGFFCWEPTRFTVLFMIGQQTNFL
Ga0209190_100032936	F002909	N/A	VAEIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFAPGNITKSPTSINTILVAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKPSEGQTYDSLAKAIAKKIHRSGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
Ga0209190_100032937	F038673	N/A	MWFLLFLIPLTSNGQVLVDTCVIQEANHYLVKGAIARRQVTILRKIVTSDSVIIDQQDSIIGKQKTNIGYLKDDNNALVKRNKAISRTLISYKMLSVVLTILSVVMWLK
Ga0209190_100032947	F014117	GAGG	VKHFDNDTTAAIATAISGSSAVLHFANTWQPLFALVLALVGIVSGLFAIRYYAKKIDAIDGKGN
Ga0209190_100032948	F005114	N/A	MKAIQINTSVNLTSGLSIPSGSVCVIAEGYADVKSQKDGIIPAQIATFVFASVQAFAEGKAPIQGIQDFNTTFSGLELSVADYETLAAETLLINAVYSALNAIYPAQVEVITL
Ga0209190_10003295	F031025	GAG	LKNGRIWNATTYPLFFIVALSITQQPDSYAPGFNDTNFVITESSGGIYTKDNFKFIANVKVAATSVAKLKAPIYYGSTNKGVFNIGRILESYVGNDWNFADTSPSGCTSSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVSYAQAQYLATSSSAKFLTNVRTRYIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPVGSQLTIPGGATYFDVVLKLGGTAKSETYRITIKDECSKYETTDIFFMNRLGGFDSFRFNMVRRDTFEVARKQFQSNPYSLGATYGYATSVRTRSNYHTTASQKVKLTSNWIDDTESVWLRDLIESPVVYMYDGTLYAVNIDNATYEQKKGVQDKLFNLELDVTLSFADKSQRL
Ga0209190_100032951	F072093	N/A	VNKQHNILPTSPVDVFFGLATQSGDLLLTQDYDFVGFDGIAFIDSKEYNPTLIQKQSNRSLTSKVYKPTLASKKIDYTLNLKTYNFAESKKQRNISQSAKSYVPSLSSKQNNITQSAKSYTPNLSETIIQDDFTFLVTQDLNFLTTQNGDYIGFDSAFIGYLLTTNNEFMRTQDGNFLEL
Ga0209190_10003296	F026270	N/A	LLFEGGDEGDDRAVDQSPIVWMEIVDKIVKGDRTKWDFILEMPLIEFLNAMAFYKAKTKERQKRLEDAAGKGFNPYIVACLNEML
Ga0209190_10003297	F021301	N/A	MNWKNITIHQLQEIHSCRDMSDLERQMNILAIALNLSMDEVESMTLDKLTTEFEKLSFLNDLPKAPIQFMFKLRGRYFKLAKTPNEMCGHHFIELQQVFNGDVIESLNKIVALLSVEVDFFGRNKKVVDAQAHYEDKCALMMHLPVPLPYTYALFFLEVYPELLKNILCSLKEEMKEMTEQLTNPQ