 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027736 Open in IMG/M |
| Scaffold ID | Ga0209190_1000226 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 40550 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (88.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003539 | Metagenome / Metatranscriptome | 480 | Y |
| F003658 | Metagenome | 474 | Y |
| F003862 | Metagenome / Metatranscriptome | 464 | Y |
| F012001 | Metagenome / Metatranscriptome | 284 | Y |
| F039991 | Metagenome / Metatranscriptome | 162 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209190_100022613 | F003539 | GAGG | MNYIEDYNNLVQTLATEYARKYTMVERNDIAQELWVWFVAHPRKYKEWSELKQKDQDKLIAKSLRNAALKFCEKEKAKKIGYDMSDLYYYDTSVIEVFLPSIIGDSYEIPTKIKDLGGTIKTSEISDGNNWLSLRSDILSAYNKLSKAKQNVLRLRFSVEQPDWVLLSKDMDSTPDGARMKVQRAINSLIKNLGGWRTYNEPDVTEVKETVEENV |
| Ga0209190_100022614 | F003658 | GAG | MSTMPVNDLRGQPAFACICGCMMFEITVMWDIETREVTWYDLAQKCKECGTITTAPTPMDWRDCE |
| Ga0209190_100022617 | F012001 | AGGA | MNNEKIKQIALTYLRSAAAVAAGLYMTGVHDPKTLASAFVAGLVGPILKALDPSAKEFGITKK |
| Ga0209190_100022637 | F039991 | AGTAGG | MAKQKKETLAVAWCDNGMVDGKFMEGVVDTIINSGVEFCGSLRAHGNQIAQQREMLVNRWYDNNKSDWLLWLDSDIMITPEKFLKLWNRRDAVDIPLLTGVYFTSNEPEQPLMKPLATVYEFAEAEFGIGIRRLDPLPKNTFMKVSAAGMGFCLMHRSVITRIKEALPGVPFFTEVGANKQFTGEDIYFFAVVNKAEIPLWCDTGATVGHMKRFNMDENYYDAFSRGKGYAN |
| Ga0209190_100022641 | F003862 | AGGAG | MATYTLVTPTLEQGPIGAHRLFTHFKQRTKSYTIILSGGVYSLIQFPTEDELATYTAYYMGGCQHTGITDAIRTAMIADGIVTSANFTTE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |