NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000013

Scaffold Ga0209190_1000013


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000013 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)136900
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (11.40%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013274Metagenome272Y
F013864Metagenome / Metatranscriptome267Y
F034077Metagenome / Metatranscriptome175Y
F038994Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100001334F038994N/AMVLSGPKRVSRTASLVNSGCHFGSMPGSAPKIGRGSWSSLTYRQNGMTCDCLRKIRFGTCAEQYAYLKEKNLIFNCKLTGGVGRQPFTKNCAPGKA
Ga0209190_100001335F034077N/AMVNSKIARRVMFNSTGPTNAIRTDTMNGGGDKKGGSTPAGTGQMRSFAMRNTISEPAKNKDFVFKFIERLSPARHSGPKL
Ga0209190_100001338F013864N/AMNAILPNPNDQSTDTLAKYIVLGIFIIVALVTIQYIFRNHIGMIEGLGNRNSKKGSTDPLEDENDGDIITIAKRQEELTTKTQKSLNMDSHYNHYNKIIENMDQWVNAKIVNSLKSVSREVHGEGKMEDIIRHMNELNTMNKFKLTLEECSRYIDSS
Ga0209190_100001382F013274N/AMENLAGPEDLVPSFKIFSMLIIITIVIKMIFQYGYNENAAPSFSEMKSLTDISLVKDEIKKKDSSDLKKDVTVYFKSYIFYYLTLLWTFCLIITIISVTFNKYNPDKPGCMMRMSLLNIVPLGLFTGIILWIIYQNTVYFNKINSGHVAESYITFDVAVNLLLLVQASIIYAYINQQMFCAKEMSQYSEALGKYGPYIAMFVAIISIVCMVLNEIILRFFTTDG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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