Scaffold Ga0209190_1000001

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000001
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 319152
• Total Scaffold Genes: 372
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (32.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055390	Metagenome	138	Y
F060563	Metagenome	132	N
F093170	Metagenome	106	N
F100276	Metagenome	102	N
F104368	Metagenome	100	N
F104369	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_1000001127	F060563	GAG	MPIFCEPLAAETLRALNQAVNDLPPEHHLRKDSDAGIVSIVYDQSKNVTVFHGKSGFYFRRGPVVDAIKSDINNGRGLICTAYELADTSAAASVIASFEEKFGTKNAKKIDIYTTEFNNRRFLLAKFPANVVKQLFETQGGTMKTGFKGPRDNLLKIPTLDKYFEFKETTEPTVSSVFATQYEKGNYDYVKSVHYQLLQEVISHPNLGITLSPVAEWTS
Ga0209190_1000001187	F104368	AGGA	MDRFNQVLDKAFPNVKTKENYKSRLRGLTKTLNEADPLVILKAPDTYYPKLQTLYPSFSTRKNMLTLILVLFREDQALKTENPAAAAKWKQYHDDLVRIQEAKVRRSEPEDKQVKQYTSYEEITEKYRELKTKTPHNTLKTSQQFLLLSILVHLRPKRADLGAVKVYNEDDPRKTDENYIVLRTEGTSYLVMNLYKTSKYYQTVEEDLPDELVKDLRTSLGRHPRNYIFTKENGEPMSNNTYSVFVKHTFEELFGRSTGVSLLRHIYITEKLDFDDMTIQEQEDEAKLMLHTSGLQRRYKWPKKVICPKLCAPYMKIDTTPKTRKFKRKLMTKKPTKKTRDRRSPQH
Ga0209190_1000001232	F093170	N/A	MEVGYKLFPRGKRYAYMVINSKPVFLRNIVFIHNAENPSQIVIVHEWGMSDHRWEPPKGQFEWDELSATRNGTIMPYKQILSCMRRGVLRETMEEAKIMPSELIDLTPLDTGYSQDWTESNVPNAMFMYQFWRATITPTTMLEAQRRTQELVDNKDWRHLLPPDVLEKDNIRWWSPKEENAYKYIRGGFSQKMTELYFKMLNKSRK
Ga0209190_1000001282	F100276	N/A	MEPLLYAGVLFIVLIGLSLFFYLRPKYLQEGFAVIALEGETMPKCLLRSIEAQAILKHLYPMKQAAPASKEAMAYNELKLILEKVLCIDADITGSGAGPYQTYQLPFATQHDIEPPASFVGRCLKKALRSRDIEVEFMKFNDRGNILIDTLVYDGDERQQLRDAFRNVIVKTAHNIAFTCLSEKATLDRPSGPRDPGYYVPHFSLEQGPYEIKGRFQYF
Ga0209190_1000001288	F104369	N/A	MSVTTLSIKDIPYSLVPNTAFHPINIDAAIRRIRSDYFDKVQWVFLEQPVTMDLILTTILESPRAQATWATVFEYRNRPFYMIRNLAHTNTTLPYRRVLVVKLDAFVIPYPMRTWDRVHSSLTREEFYPLPSMTMSQ
Ga0209190_1000001305	F055390	AGAAG	MSTLSFAPVMPNPSGSACFTSTDPHYSETGAPARMADGRLVTDYRPRCYQYPLLAAQTWGDNDARARMVHGADELMRAAREMNDRKNTATSCDDTMVPELYKRVCTWEGCKTIPGNFQGIGTGRIYVPSAAGNASSPQALSDEDVPQIPQTWTRQPPRMPSQCAVDDPEAQWLYKGDVVNYGGGAKSHPYSAPRA