NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1057591

Scaffold Ga0209087_1057591


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1057591 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1752
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022658Metagenome / Metatranscriptome213Y
F058142Metagenome / Metatranscriptome135Y
F058146Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10575911F022658N/ATLIRLDTFGAIQVFYESLVTDVSNMNEVDVQNYEFAVKRCENEWTKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNGDRRYF
Ga0209087_10575912F058142GGAGMARTISYNVLNQPYTTQEQILAVIRRDIPSTWNIPVFEDFPSESEKVRYGVYVSDVHQDDRNPHQLGVQYGGSIYHAYDTFSVTYISYQEDPYNQPVNAIIANLVTAVKDDGQQLFDGYFERDFTQVRTYGPTQAERHDWTFRVLRLEFNT
Ga0209087_10575915F058146AGGAMKLSQLTAKPQLVLIELNDDDVIKEFGESITFHTWDRQPMDVFMKLAGATQNDTSAIISIVRTLILDDKGKEILKDDAMLPT

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