Scaffold Ga0209087_1056430

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1056430
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1776
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F019477	Metagenome / Metatranscriptome	229	Y
F020008	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10564302	F019477	AGGAG	MSTWEFAEFRIGRLFHCNGNDWIKQSTRTARMLSTGRVFYFRKNEIIRAIAW
Ga0209087_10564305	F020008	AGGAG	MGQYANTVNAYAMSAARAKVYTMQNTLQSYGQTAYMLNVSSAKFRRDIEAKKIKFIAQLEKEKIAKMQAEIASLQAKHSVA
Ga0209087_10564306	F000354	GGAG	MTKVNYDRFASFDMNECCDHFDSEKQSNWKKIGKFIVADGQEYQHIMETEFDFEDTGDGEYAAFDAGVKYALTKMNIAFEAAGLDLQICEVDLVESMGFVMVRADDEPEDFVKRVLKKPVLMVESWID