Scaffold Ga0209087_1028419

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1028419
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2693
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F022400	Metagenome	214	Y
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10284191	F022400	AGTAGG	MVLSQTGRQRKMRKTAIESSQRTTLRLVLGGVGERASASSLFGPVRAGLITTQRTSEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTKHLVRRTNSFLNTDTTDSI
Ga0209087_10284192	F034906	AGTAGG	MKNTNRVKTAVDQAVRQRNYRRARDRALARLANDYPYVYRNYLEQEKKVDESMGKKWLDIDGNTKPNVNRAR
Ga0209087_10284193	F011646	GGCGG	MTNVVELRNGAVKRTIFYEVSDTQDIAVWGGESPSEALKWYRNSPVGSKIWVSEWLINEEDAKEVSSQIEITPLILNTIADCMSRWSK
Ga0209087_10284195	F006842	AGGAG	MKATPAICGDHLVPISECDCLSYMREIENSAKKLIQLAQEREAMR