Basic Information | |
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Taxon OID | 3300027734 Open in IMG/M |
Scaffold ID | Ga0209087_1028419 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2693 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006842 | Metagenome | 363 | Y |
F011646 | Metagenome / Metatranscriptome | 288 | Y |
F022400 | Metagenome | 214 | Y |
F034906 | Metagenome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209087_10284191 | F022400 | AGTAGG | MVLSQTGRQRKMRKTAIESSQRTTLRLVLGGVGERASASSLFGPVRAGLITTQRTSEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTKHLVRRTNSFLNTDTTDSI |
Ga0209087_10284192 | F034906 | AGTAGG | MKNTNRVKTAVDQAVRQRNYRRARDRALARLANDYPYVYRNYLEQEKKVDESMGKKWLDIDGNTKPNVNRAR |
Ga0209087_10284193 | F011646 | GGCGG | MTNVVELRNGAVKRTIFYEVSDTQDIAVWGGESPSEALKWYRNSPVGSKIWVSEWLINEEDAKEVSSQIEITPLILNTIADCMSRWSK |
Ga0209087_10284195 | F006842 | AGGAG | MKATPAICGDHLVPISECDCLSYMREIENSAKKLIQLAQEREAMR |
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