Scaffold Ga0209087_1018938

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1018938
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3404
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F010599	Metagenome / Metatranscriptome	301	Y
F018928	Metagenome / Metatranscriptome	232	Y
F032149	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10189382	F010599	N/A	MIFLVFFATLSFSFGLSYLATLSKLKKSNLLLAELFIKNRALEELNSQANSGINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVKGLDNYSDKLLALLPEIDQRKK
Ga0209087_10189383	F032149	GGAG	MKKKIIILSLSIISALVAISLFFASRLSQLSELDLFDIEEDDF
Ga0209087_10189385	F003688	N/A	MYTDTMRMAVHSITPPKGFGVEIIDNEHFLTIKLDERKFLHMVHDDKISALQYVVKLKKALEECGAIVLITREAIK
Ga0209087_10189389	F018928	AGAAG	MEKIVSKNENLIWNAWDVIDLKESDTAKTSPAGIRIKDKWYLHRVYKPGRNGWDIPNRYK