Scaffold Ga0209087_1011376

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1011376
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4538
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004641	Metagenome / Metatranscriptome	429	Y
F045571	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10113761	F045571	N/A	KAGPKGGNDKQEDRKDDAPKGTGGSNSPQNTNNAQASSDKPAAPTARQELQARREAAAKADAVEKGKNLAGEMGKASDLEAQKAVQNVVIQAMGFTPGFDAYSRQIIVQQQFYKPYQVYGNQKTIDNRANLRMFGGTDKLHNEMIDAQYNREK
Ga0209087_10113766	F004641	GGAG	MAEENKQDQKGAFIEKLLFALLPLLIGSTGYLISALGALQHDVTVLNAKVSLVVTSDNKQASNTGAELAREKLRQDLTEAVQRNRDAIQENRLHIAILEEKTNVTKKIKPLDSAPKKD