NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1008220

Scaffold Ga0209087_1008220


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1008220 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5452
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F014489Metagenome262N
F015570Metagenome253Y
F024504Metagenome205N
F032957Metagenome178Y
F043820Metagenome155Y
F079808Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100822010F015570GAGGMNDKLDEAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGTIQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0209087_100822011F024504AGGAGVIRKTIGVEAPYRKSDYTYKDMLIDRIKDLEALVAKLEQRIKVLEAK
Ga0209087_100822013F079808GGAGMKIQDELQAIYEDESNVFYCCYCLQPQGEKIGCCHENHFVEFKYLDNDCKQEIAQEILNG
Ga0209087_100822014F032957AGGAGMDELIKTTRMFPRSLREAYPKDYVNENIIEGPFYSAPNIHDIPVLFALIAVLSMIAVAIWRYF
Ga0209087_10082204F043820GGAMTLNDARKHLDRLREGHPMPVSLTTKALLITGDIPRISDKPLCFDSNESTDDRGGEIQNQGTKEGFSYSRYLGSTTNKGT
Ga0209087_10082207F014489AGGAGMELKQQHISILKRLAHGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGLALEIDEVWHITGFGVAKLAEQTPRVNKDRVAAGTTTETYDGADLKNGGNRVGASDFLKYPSKFGDNLVLPRVSL
Ga0209087_10082208F004231AGGAGMSVKPSDFKHEICVYLEGIGECLVCFDILSPGDELDADHSDSYEIDFSVFDDQDKHISYDISKKQYNHCENKAMDEMLEITTQWRKEWEEISV
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