Basic Information | |
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Taxon OID | 3300027734 Open in IMG/M |
Scaffold ID | Ga0209087_1003374 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8804 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018511 | Metagenome / Metatranscriptome | 234 | N |
F060725 | Metagenome | 132 | N |
F073276 | Metagenome / Metatranscriptome | 120 | N |
F090088 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209087_10033741 | F073276 | N/A | ATDAVPGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDIDTTLQITKWSNLIAFAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLVTVQATFNISIKSEC |
Ga0209087_10033744 | F060725 | N/A | MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFSDVGNILVRDLGWSTIEVSETTVKANYNPLTAEYCFILMKWKAWENETYILYNELTPAIFVWQILEKAFKNKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNFRASNPSPASFVYSAGNNGTVNITFTDETTSPNFDTGGNYTGGIYTVPINALYELIAELNVTLTASIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSISLEFLGDLVAGDTVKLRLRYENVTFNLSIAGSLSVVAEKEGLDTGEIVNLQYIIPISWYARDIIADLTTIFNLAWETDVLNRQVYAYPKDNYTIRYRANSTGAASLTSFEGFFKSSNKYDLNTRDVDGSEFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPQDRFENGIEFIYTNFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYSTFVKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNINDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIGINVNTHYDGANYEVVVNGVTKG |
Ga0209087_10033745 | F090088 | AGG | MEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASIIHLNLIRGVLQNDEYIINMAYLQDVINKIKI |
Ga0209087_10033747 | F018511 | N/A | MKVNSIWGELASRIPQEYKTQVMATVDRTYRVLSIETSDMDYLFQIYNNFVNNYEPERRNCPACRTKVVGKMRQIVQFWRDEQ |
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