NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1003374

Scaffold Ga0209087_1003374


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1003374 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8804
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018511Metagenome / Metatranscriptome234N
F060725Metagenome132N
F073276Metagenome / Metatranscriptome120N
F090088Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10033741F073276N/AATDAVPGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDIDTTLQITKWSNLIAFAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLVTVQATFNISIKSEC
Ga0209087_10033744F060725N/AMIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFSDVGNILVRDLGWSTIEVSETTVKANYNPLTAEYCFILMKWKAWENETYILYNELTPAIFVWQILEKAFKNKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNFRASNPSPASFVYSAGNNGTVNITFTDETTSPNFDTGGNYTGGIYTVPINALYELIAELNVTLTASIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSISLEFLGDLVAGDTVKLRLRYENVTFNLSIAGSLSVVAEKEGLDTGEIVNLQYIIPISWYARDIIADLTTIFNLAWETDVLNRQVYAYPKDNYTIRYRANSTGAASLTSFEGFFKSSNKYDLNTRDVDGSEFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPQDRFENGIEFIYTNFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYSTFVKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNINDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIGINVNTHYDGANYEVVVNGVTKG
Ga0209087_10033745F090088AGGMEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASIIHLNLIRGVLQNDEYIINMAYLQDVINKIKI
Ga0209087_10033747F018511N/AMKVNSIWGELASRIPQEYKTQVMATVDRTYRVLSIETSDMDYLFQIYNNFVNNYEPERRNCPACRTKVVGKMRQIVQFWRDEQ

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