Scaffold Ga0209087_1003374

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1003374
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8804
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F060725	Metagenome	132	N
F073276	Metagenome / Metatranscriptome	120	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10033741	F073276	N/A	ATDAVPGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDIDTTLQITKWSNLIAFAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLVTVQATFNISIKSEC
Ga0209087_10033744	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFSDVGNILVRDLGWSTIEVSETTVKANYNPLTAEYCFILMKWKAWENETYILYNELTPAIFVWQILEKAFKNKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNFRASNPSPASFVYSAGNNGTVNITFTDETTSPNFDTGGNYTGGIYTVPINALYELIAELNVTLTASIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSISLEFLGDLVAGDTVKLRLRYENVTFNLSIAGSLSVVAEKEGLDTGEIVNLQYIIPISWYARDIIADLTTIFNLAWETDVLNRQVYAYPKDNYTIRYRANSTGAASLTSFEGFFKSSNKYDLNTRDVDGSEFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPQDRFENGIEFIYTNFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYSTFVKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNINDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIGINVNTHYDGANYEVVVNGVTKG
Ga0209087_10033745	F090088	AGG	MEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASIIHLNLIRGVLQNDEYIINMAYLQDVINKIKI
Ga0209087_10033747	F018511	N/A	MKVNSIWGELASRIPQEYKTQVMATVDRTYRVLSIETSDMDYLFQIYNNFVNNYEPERRNCPACRTKVVGKMRQIVQFWRDEQ