NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209087_1002070

Scaffold Ga0209087_1002070


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1002070 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11444
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F006138Metagenome / Metatranscriptome380Y
F008741Metagenome328Y
F009142Metagenome322Y
F023059Metagenome211Y
F035669Metagenome171Y
F093492Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10020701F008741N/ATIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPDEIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMTTMD
Ga0209087_100207013F093492N/AMASLVIGSAIGSKVLQRQNFNKEPNGLETIIEAYAIQTANRDTIVPEKNTLHSAFSSSAKKYSRMVVESVTTEEQDGGITQMLVTFVGLTTLTGLPPAIVRLIPTEGAGIYGPPLTIEAEFVTDVSETDFIKGNINATASIKLGNISFGTVNQMPPIINGTQMPANPRPAGAVRRAGAFGQYFGYCVEAFSCERRGIFLIARTTYIEKEGLFRIV
Ga0209087_100207014F035669N/AMRENQLNELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEKENGFEISGGVGDGFAEVTLNVCKNGVPSTITVLAKA
Ga0209087_10020702F005584AGGAGGMAGTIDTSYFRTDLQFMIADMFQTVTGLASSAVSASVTDLTTASELEIGGEVSRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0209087_100207020F023059AGAAGMFEAAIASLAGVVGIVFWWLKNRAKTRKERDDEEIAYHRRLRDAEVDSWIHRR
Ga0209087_10020704F009142N/AMSNSVQINVEDALEDLLVGISGLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKVSQQAFDAEYCLIFEAFYSETPPLFTKIQNNISGTRVYTARITGQTPTIKTAKRAWQRGLKMSLICTPQ
Ga0209087_10020707F006138GAGGMAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.