Basic Information | |
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Taxon OID | 3300027734 Open in IMG/M |
Scaffold ID | Ga0209087_1002070 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11444 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (55.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005584 | Metagenome | 395 | Y |
F006138 | Metagenome / Metatranscriptome | 380 | Y |
F008741 | Metagenome | 328 | Y |
F009142 | Metagenome | 322 | Y |
F023059 | Metagenome | 211 | Y |
F035669 | Metagenome | 171 | Y |
F093492 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209087_10020701 | F008741 | N/A | TIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPDEIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMTTMD |
Ga0209087_100207013 | F093492 | N/A | MASLVIGSAIGSKVLQRQNFNKEPNGLETIIEAYAIQTANRDTIVPEKNTLHSAFSSSAKKYSRMVVESVTTEEQDGGITQMLVTFVGLTTLTGLPPAIVRLIPTEGAGIYGPPLTIEAEFVTDVSETDFIKGNINATASIKLGNISFGTVNQMPPIINGTQMPANPRPAGAVRRAGAFGQYFGYCVEAFSCERRGIFLIARTTYIEKEGLFRIV |
Ga0209087_100207014 | F035669 | N/A | MRENQLNELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEKENGFEISGGVGDGFAEVTLNVCKNGVPSTITVLAKA |
Ga0209087_10020702 | F005584 | AGGAGG | MAGTIDTSYFRTDLQFMIADMFQTVTGLASSAVSASVTDLTTASELEIGGEVSRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT |
Ga0209087_100207020 | F023059 | AGAAG | MFEAAIASLAGVVGIVFWWLKNRAKTRKERDDEEIAYHRRLRDAEVDSWIHRR |
Ga0209087_10020704 | F009142 | N/A | MSNSVQINVEDALEDLLVGISGLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKVSQQAFDAEYCLIFEAFYSETPPLFTKIQNNISGTRVYTARITGQTPTIKTAKRAWQRGLKMSLICTPQ |
Ga0209087_10020707 | F006138 | GAGG | MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS |
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