Scaffold Ga0209087_1000888

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000888
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18314
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100088811	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMTKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVNLEGAMQEAMAPDESEVMQEPTGDEIQEAIRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFGQAMMQIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMDEAVKILQAQAAKGPSAEQQETQSKVALNNAKVEESGSVTALNMRKAQDIDTDDMFEALAAKRGKLSSVQVD
Ga0209087_100088815	F000857	GGAG	MELNLNNEEAKVNEDYYTGGVLAGGLEGALIKNDKMFNEVKSGTWSQTFNTPNMNYKVGAIDGERYVQYEQKNVESVRQYCKDRREFYKAIGTTDNPLFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKTDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK
Ga0209087_100088816	F005087	AGGA	MALFIQSGNALVSRVAQWVGAIPSSISINATAFNSSTSVITASASVDGIILVGDFIGTSTLKPYTAVLAVSGTSITVSDIEGIWAGTTYPTAILKLPTQSTSEILSCIQLCELKMRTIELPALRSDPYGATPSTLLTDSNGFATIPADMNKPILFFQETPNSSVPPGTPAASMGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGNKYIFTPNPGENVSIKAYYQRTFPFLFGPTDDALNPIVQNNAALASFPEGYMYGTLWAYYDKNKNNEEAQKWSARYEDAYGLIEDQNFKGKWLGGDQHLTSEFQPRNYRYSFK
Ga0209087_10008882	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDRDVFRKNVTVATTVQVFDKGREFIAVCRGDKVIDTFLGQAEVQDTLLAYCWFDRGGYTTYSNEEISNAKFHHVDLKLSPRLRVRLINEMIDQHILWAYRWGIPVVCSTSIRAEHDGFMKIHKKRGFAVNGSYAWIRTEKGIECLKK
Ga0209087_10008883	F098944	AGG	MFEEIRPEGSTVTSEEIKKKAREYAKARRAQNKAMKLATGQIEPKEAPVVDEFDMTAFVPRSQKAAGGRPKSIVNKVTEYGALFNKLNDERTSKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFLDSLRKV
Ga0209087_10008886	F027490	GAG	MSYGTVINGGAQMRKGVTKGINDKLSTRTAEDDRRATVAGAVNSAYKVNTISSQHTNNTKGGAFTKPSNRSKDYAA