Scaffold Ga0209087_1000697

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000697
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20869
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (97.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035674	Metagenome	171	N
F060611	Metagenome	132	Y
F096868	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100069718	F096868	AGG	MLKTMRAKYPGKCSLSGARINPGDFIIYNTETKTAELEPDADTIQFTSTSPRVSDVFNISGREFYRNKAGRCLDAPCCGCCTI
Ga0209087_100069729	F035674	AGGAG	MKPGQEACLRMAEYQYKRRNQDMMWRWLFTWAAWSDNVDFFSDPRVPVFKPRKPKKRWKNLTNAETLGIIKQLPSWPTDHLNTFIFKVLVEEKFKEKNA
Ga0209087_100069734	F060611	AGGAGG	MNETTKRYPRTMHEAFNCDSEPISGPYGKQPFWPVVVIFFVVLIAGILLFWSRV