Scaffold Ga0209087_1000640

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000640
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21621
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (90.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002386	Metagenome / Metatranscriptome	565	Y
F011483	Metagenome	290	Y
F043818	Metagenome / Metatranscriptome	155	Y
F052471	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100064018	F043818	AGGGGG	MRLKHTIAAILEENQDELFCPFCTKPKGDEIDCCDQSGNWFKLRYFDFDTQFSIAKTIFNLQKGVPDQKTDGQEI
Ga0209087_100064029	F002386	AGG	MRFAFIPKAQYTIGQIITVQGQPMRVESYTHTGRNIIVHSLEDAPKFVRIVCICSDSPVILGVSA
Ga0209087_10006406	F011483	AGG	MTYDLVAYLRSEIKELHHILHETQLALAQANVRLNRRSEPLTEERIYTLYRRSLDWRKLARDIEAEHDIE
Ga0209087_10006409	F052471	AGG	MIRKIRTFYGRRNGQRGNKVTTVDRGEAWLCEKCGEVIFFEHLVPKHFCKTQIKPVVHSDTESSLPP