Scaffold Ga0209087_1000609

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000609
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22240
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008995	Metagenome / Metatranscriptome	324	Y
F017466	Metagenome / Metatranscriptome	240	Y
F021943	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100060914	F021943	N/A	MRTALDTELFPDLCEVVEMPLHNQWVYLIQKNGNSSLRLQQTRDNLAVFTNEGIRALDYVDVYIRNPRARYVSGVNTYLQHLQRDHPELDSSTAFWFAKRYKFLNTHYLPQFYWLANLARYLHRDAKIRIRDFNDFKKITDFQDRAKVVPPSKEFVDMLLNGNDIALWLYLDQILLDQVGKQFTWTELLDHYQHNHKNIIDHVLPKT
Ga0209087_10006093	F008995	AGGA	MAIQVINAVSNVAWTTDKVEIATTTANVTFQVSVVQLTYVQANGVPANATMTTPTGNLYANVIVVPGNTVQQYYVGAGNYLNIVTGTGFSATALGAASSATAGSNGI
Ga0209087_10006096	F017466	N/A	MRAREFVAEARFGSAQDVPADAKKLPKSHASAIKGAVSMPDISMTKQGGSPYTQWRFSLAMAGAPDFPTPAAGAFAGDPLLATYTDVEMDIINAAAKSVGAGRVNKLTDNRSTEADYVQKTSPVKGFRGYPR