NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000163

Scaffold Ga0209087_1000163


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000163 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41979
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (77.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006261Metagenome / Metatranscriptome377Y
F049581Metagenome146Y
F058789Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100016312F058789N/AMGSFASKAPCREADPWLFDQFNLDLVQPALNYCSRCIFWQECESLVQPKPSFYDGVVAGKVWRNGRILAKLDATSPNRLIVGEEPDEENFDALEFRGGELLGNRDELFFSRKESDNRGEQSSQEGL
Ga0209087_100016330F049581GGAGMSKQEGRPFNEDELIDQIGRMNILAISGGRVDVVKNNQGETVEIELKVANGYRVSITLGWNDEWIVSRQLVRKGVVYPKGTVEGVLCDNIGEVAYKASCFRSYEFGKVIA
Ga0209087_100016372F006261GAGGMATISSGYTSSAPLLINNPLTWSFVAPDDNTIKVVGVNVQQPLSQNIVEAYGVFKPLGASKSVVVSQSIYGIDGTYEITVQGEDDWDELYPVLVYQGTLLVRDPLARLKYVRFVDRNWTESGNIDGLIRVVKVTYFEVDAP

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