Scaffold Ga0209087_1000026

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000026
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77648
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (39.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032929	Metagenome / Metatranscriptome	178	Y
F035189	Metagenome	172	Y
F041772	Metagenome	159	Y
F048303	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100002625	F032929	AGG	MIPFTIGVVALVAIGVGATMSQNMISNNPFESTDLFKRGLGLPSIWVFFDTSIVNSRNYADFGSRSSRAINLPFLNLCYESIAKQNGFIYQIKAISGLAGLAELLGGWDQLPEKLKNPLVTLEPTDYAWIRAAVLAKFGGLWVLPSTICIRPFAKLPAVPTFFGTDTDETFVGTAGTAVPSFQVAWSPKPDEPFWVAWEALSRKRLNTSGGGDTARGAEKWEFLALAARFPDIEVRPLAEVGRKGAAGRRIQIEDLLAAGQEGALPFDIGATAVYVPLPWPELRDRRAFGWFLKMSEDQIAESDLVIRDLYKMAGVI
Ga0209087_100002680	F048303	N/A	MDSLPKTHVLTKEEEEFVKKLSPKEKELHLLAIQLLETSYRPEWSHMYKEKATKK
Ga0209087_100002694	F041772	N/A	MICMEILLKNASAALLAYSAHYAAMKFYNYACIPDGVVGYLSGLISTGSPVCQSVIQVISSTQVSYSSILLMSITRITVDLFSPTQSQKDD
Ga0209087_100002699	F035189	N/A	MPVKEKAERLKETITLLKKLPEVGVARESYAYSQVQDLMTEWVNGGGYKKEVIDFESHVGILTLPIVEDRVSSLDLKAKMKK