NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1052655

Scaffold Ga0209297_1052655


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1052655 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1835
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F006842Metagenome363Y
F011756Metagenome / Metatranscriptome287Y
F018703Metagenome233Y
F024719Metagenome / Metatranscriptome204Y
F029678Metagenome187Y
F037113Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10526552F018703GGAGMKREVEQRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRTYLEEEMEADETMGKKWLDIAGRTKSASNRTR
Ga0209297_10526553F024719N/AMGEVVELPSRGKITVVFYEVSDSQGIAIWGGENPVEALKWYRNSPAGSKIWVSQYEVDEEDAELMLDSVEITPIVLATITDSIDRWSR
Ga0209297_10526554F011756AGAAGGVSEPRYLSGDEYALTGGYEELINCLVCSKEYDRVEYRSNTCSDCEDEMIMRERVRANG
Ga0209297_10526555F029678AGGAGGMKRVNGFIIFNRETGQKMATLPLTIPIGSTVEAYEKAGHKVGWAWEEGESE
Ga0209297_10526557F006842AGAAGGMKATPVICGDHLVPISECDCVNYLQELKTSAERLVQLTREREELTK
Ga0209297_10526558F037113GGAGMTWTVWVGGSEINWQHYSHKIDAERVAEFWREVKGYDDVIVEKVAK
Ga0209297_10526559F006618N/ALEKQIVIKGKEHEETGWKRYIYFEYEGNEYELTLFYDEFTGYDTFWRVPERTPDWVVEWDSEAHEGMSFTHYLDDLTWESA
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