Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1052655 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1835 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006618 | Metagenome | 368 | Y |
F006842 | Metagenome | 363 | Y |
F011756 | Metagenome / Metatranscriptome | 287 | Y |
F018703 | Metagenome | 233 | Y |
F024719 | Metagenome / Metatranscriptome | 204 | Y |
F029678 | Metagenome | 187 | Y |
F037113 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209297_10526552 | F018703 | GGAG | MKREVEQRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRTYLEEEMEADETMGKKWLDIAGRTKSASNRTR |
Ga0209297_10526553 | F024719 | N/A | MGEVVELPSRGKITVVFYEVSDSQGIAIWGGENPVEALKWYRNSPAGSKIWVSQYEVDEEDAELMLDSVEITPIVLATITDSIDRWSR |
Ga0209297_10526554 | F011756 | AGAAGG | VSEPRYLSGDEYALTGGYEELINCLVCSKEYDRVEYRSNTCSDCEDEMIMRERVRANG |
Ga0209297_10526555 | F029678 | AGGAGG | MKRVNGFIIFNRETGQKMATLPLTIPIGSTVEAYEKAGHKVGWAWEEGESE |
Ga0209297_10526557 | F006842 | AGAAGG | MKATPVICGDHLVPISECDCVNYLQELKTSAERLVQLTREREELTK |
Ga0209297_10526558 | F037113 | GGAG | MTWTVWVGGSEINWQHYSHKIDAERVAEFWREVKGYDDVIVEKVAK |
Ga0209297_10526559 | F006618 | N/A | LEKQIVIKGKEHEETGWKRYIYFEYEGNEYELTLFYDEFTGYDTFWRVPERTPDWVVEWDSEAHEGMSFTHYLDDLTWESA |
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