Scaffold Ga0209297_1027836

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1027836
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2645
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023348	Metagenome / Metatranscriptome	210	N
F049623	Metagenome / Metatranscriptome	146	N
F054865	Metagenome / Metatranscriptome	139	N
F080903	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10278361	F049623	N/A	GMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT
Ga0209297_10278362	F080903	N/A	MYNTLLEKQANDAKDDVKSVIDDLITEIHELEEALEKLENKIEELEEIIEGLKAEWHDLKNK
Ga0209297_10278367	F054865	N/A	MEVKTNRFIIKYKEGFVNVPANNVEEAIERFKELRIETSAKELTIVPSNEMYKRKEEIFG
Ga0209297_10278368	F023348	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSDKRSKYPPRVAAVATVIALLELWFSIQGKSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRKRNPPKPKESALKMNATTSQPIKFTMAICFMFA