Scaffold Ga0209297_1022374

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1022374
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2995
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016812	Metagenome	244	Y
F034183	Metagenome	175	Y
F066782	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10223743	F016812	AGGA	MNTLFPELINEEDEATFSANLFKLYKLDERCGKLEAPSFRVLYLKDKNTQLHISNHFNSPTCIISYYNIKDKSCIDARTISKRLYNKIHDHYFEIKKKIF
Ga0209297_10223744	F034183	AGG	MNKLKTLAENINDEEAALLFQLMLSAFETANLQKTQYQNEDLPDETSLMVNVELDTRNVPAAVIDKLLGLLK
Ga0209297_10223747	F066782	GAG	MNDEILKKLGYNSIALEMLLKREAQINPEDILMPGERPSINKDPSLNDLSSDVKSDVRNILNKLEEVERLINDLPEYTLAEEEYDEDVRAFPMHKRYAKDELENLMEEIKLLLKYA