Scaffold Ga0209297_1012670

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1012670
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4101
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F004279	Metagenome / Metatranscriptome	445	Y
F010617	Metagenome	301	N
F013887	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_101267012	F004279	AGGGGG	MGFIEVRNGSGFTLRLENDNESLNLSTDRCVSCNDDRLLHDGQYLVCTQCHCRQ
Ga0209297_101267013	F000141	GAGG	MYTKFKCNGCSRKTEFLWLDQLDTPEGYKAYQCMSCGAVGVKNIAEALHIPDSEIHRCSKCGGWQFIKNGCHTCALIEAR
Ga0209297_10126702	F013887	GGA	MEYLTKAIRKLKPNSEFSYTDDDYSTIKWDVLDGDAPTQKEIDAAIKEVKADEAQAEATKATAKAAAEGKLAALGLTTDDLRALGL
Ga0209297_10126706	F010617	N/A	MADTRRKRKKINKRVVRKSPEPLSKLDQHYICMNEIYKAARKAGFSESCSLYFVSDRATMPDWVIGDGGIIPSIDPTEEGDD