Scaffold Ga0209297_1011828

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1011828
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4254
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F010673	Metagenome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10118282	F001964	GGAG	MSRNLFGKPLYKVQISGAIGWSDLKERVVSYQTVEFATRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERKSEKHPN
Ga0209297_10118283	F002227	N/A	MKLTIQSRDNAQTIVDLFNAILTGEEAESGATPLSIYDDNKHICSLVAKDGHQILELIIEREEGDKLVQIGEPETL
Ga0209297_10118286	F010673	N/A	MNPKLIPILKKLISRDVILQFFKPDNLPQSALAYVRHTYVMCRSLSWEEHDLIETLAPFADDIADSFREGNAPDDSVYHLFDDGSLWLKTNAYSSVWTDARDFAVEILLPRMTLSRMDADLLRAIDMEDAVESVLADFYSSFAHILNRDCGIPYSDAREHWNAYARQLSDSACEAVVLGGSESGRKEGERFASEYTVNA