Scaffold Ga0209297_1010350

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1010350
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4572
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014118	Metagenome / Metatranscriptome	265	Y
F034177	Metagenome / Metatranscriptome	175	Y
F040097	Metagenome / Metatranscriptome	162	Y
F042327	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_101035011	F040097	GAG	MKKEARVEFGITITKPWSKEMYAHNEELAEVVKETVHQMWVDALKAAIEDYRDEDELGNLYSEMDWGQASDEMVRIQKAITYYSYCNQSIEEVADEVEETLEDMPLFQLKELVEELDIKLDKGFIGFN
Ga0209297_10103503	F014118	GAG	MAIVKKNSAFYQQDAVMGKLSADSRKPQELNAIVKAAMAQAEANRVYRALQEAKAKLNPRFVR
Ga0209297_10103506	F042327	GAG	MTKEREFKVDLTLASEICQFLETILEAQLNDEFDAEEPCTDTYLDQFMPNGFVPNADLIKALLASGIIKQAD
Ga0209297_10103507	F034177	AGG	MIQEQIKAIEARLEFLKTDTTKWVSAFAQPDGCTPYNHGNYFRKLERNRLKAKLKSLQKKLQIN