Scaffold Ga0209297_1007318

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1007318
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5543
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005701	Metagenome / Metatranscriptome	392	Y
F009599	Metagenome / Metatranscriptome	315	Y
F020008	Metagenome / Metatranscriptome	226	Y
F033309	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100731810	F033309	AGGAG	MTLHQKALFCLYTGLVLLLGTLGGVEVCPDLATYDGVYLGTFALVGIALMALGASYANEAVSQ
Ga0209297_100731811	F009599	GAGG	MIKLEGLSGKDVEICKLLWNCDTLEAVDAMVKAMPPAYKSRAVVMRELMTAAQLDSVEDIDERIPHLLQRIAAG
Ga0209297_10073183	F005701	AGGAG	MFTNCVAYAKLVYNKKLNAYKMQIAFNVHKKLVGDEVKYMFPVQKQCNYVSGDLLAEDLQTEVQRTIVTAQKSLRTTNIVFVD
Ga0209297_10073185	F020008	AGGAG	MGQYANTVNAYAMSAARAQVYCTQNTLQSYGQTSYMLNVSTAKFRRDIEAKKAKFIAKLEKEKIAKMQAEIAHLQAKHSVA