NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1006070

Scaffold Ga0209297_1006070


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1006070 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6151
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011756Metagenome / Metatranscriptome287Y
F029021Metagenome189Y
F048091Metagenome148Y
F069714Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100607012F048091GAGGMIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWDDQTEEWQSGYVGWNEEKGEAEYLDDDDLIGEQLGAILEIANSASKVI
Ga0209297_10060704F011756GAGVSEPRYLSGDEYAHTGGYEELINCKECAVEFDRTEYQSDTCSECEDKRVAREKESK
Ga0209297_10060706F029021GGAGGMKELCQFCGWEIARVDWYHRYNGKLICNNCVMDTMSEREREEASR
Ga0209297_10060707F069714AGGAMPEYTKAITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLEKAELNPEFNFLFFIDELAWEYEAGNSWEVKI
Ga0209297_10060708F006842AGAAGGMKAIPIMCGDHLLPITECDCVNYLQELKTSAERLVQLTREREQMK

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