Scaffold Ga0209297_1006070

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1006070
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6151
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F029021	Metagenome	189	Y
F048091	Metagenome	148	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100607012	F048091	GAGG	MIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWDDQTEEWQSGYVGWNEEKGEAEYLDDDDLIGEQLGAILEIANSASKVI
Ga0209297_10060704	F011756	GAG	VSEPRYLSGDEYAHTGGYEELINCKECAVEFDRTEYQSDTCSECEDKRVAREKESK
Ga0209297_10060706	F029021	GGAGG	MKELCQFCGWEIARVDWYHRYNGKLICNNCVMDTMSEREREEASR
Ga0209297_10060707	F069714	AGGA	MPEYTKAITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLEKAELNPEFNFLFFIDELAWEYEAGNSWEVKI
Ga0209297_10060708	F006842	AGAAGG	MKAIPIMCGDHLLPITECDCVNYLQELKTSAERLVQLTREREQMK