Scaffold Ga0209297_1004292

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1004292
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7508
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F009147	Metagenome / Metatranscriptome	322	N
F032255	Metagenome / Metatranscriptome	180	N
F038227	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100429211	F002843	N/A	MIVPVNIVAVQVNRNNSLFVTTGIDYDSDDAVVGSEITSQYTLNPGDDLTGQPTEVVNIANALWTPAVVAAYKLANPVVEAVQPNE
Ga0209297_100429214	F038227	GAG	MISLGIALNRLFSGQAGGTDAPVLRRDVLQEDEFFVLQEDGAGKIVITFGTFDSLLLEDAGFLQQEDLFKLAIQSN
Ga0209297_100429215	F009147	GAG	MGREGFELFTTTAAQTGAWSGLIPTEPTVFTSITGNRIAGTWTSKTLPAGFPLVGNITGFQILSGSVVAFNARA
Ga0209297_100429216	F005633	N/A	VDRNDKAKIVAGPEVDASLQRTAFNTATIPEGGKLILWIQGALAPKIRKG
Ga0209297_10042924	F032255	N/A	MANSQGLAYQFGSPASVTMFDTDNTTAVFTALASIESYDLTHEADTEEVRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVAISGAPAIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTAAAIALNV
Ga0209297_10042925	F006107	GGA	MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDQDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALDAPSNDASGPFTAQFAAPLDFGGSSISNRSRTFTRTFTLFCSATI
Ga0209297_10042926	F005024	GAG	MTVDSSKFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRISDYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKSAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNAALLSMANQYGLPQENVATHKGTKARGFQAVPGFNPTASVVMTAGVADSQYNRVAGIYNTAMQKAFDDETTEMVNHMTEALLANGKVLEDNGISIK