NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1004050

Scaffold Ga0209297_1004050


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1004050 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7763
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F003299Metagenome / Metatranscriptome495N
F004234Metagenome / Metatranscriptome447Y
F008546Metagenome / Metatranscriptome331Y
F071222Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100405010F004234N/AMNFINLFKKDNTYFSNWTTDYNSDVYIAGTIEPFTYDATETDDGDMSLFILSDANLNLLKSKL
Ga0209297_100405012F071222N/AMDKQQIMKIILAEEASLLDQAREMRDAFGNEDPATQRAFSQWIVISNLIDRINEETN
Ga0209297_100405014F001808N/AMRYLAIILLLSSCSAQYHLNKAIKKGYKCEETGDTIRITTLDSIPVIINNDIIWEKFITTKDTIIKYNTVYVPKTRLDKKIEYRLKVKTIYKDRIVEKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFARERYLF
Ga0209297_10040504F008546N/AMKKTEVKWWKLLIVFFSAIVLEANSIAGFRFLMDEHWMGMVMMAGINPFLCLPMNHYTIEVKTFKGRAIIATAFSTGFIVGILTIRPFFI
Ga0209297_10040507F003299N/AMCQLKIMTMKIYKVVYKTFDYWNGPVKLVTRIIEAYDADHVKQLIQKNDDLILLIEEV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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