Scaffold Ga0209297_1001989

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001989
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11576
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019438	Metagenome	229	Y
F042869	Metagenome	157	Y
F057982	Metagenome	135	N
F091642	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100198916	F057982	N/A	MRYRITYNDGMYADWDSMQKDLAWAYRWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITKEKA
Ga0209297_100198919	F042869	AGGGGG	MKTLIGKEDTIKNRIPIGSIELKLAVARAEGYAIREDKTRYHHIVDGTVVTSVDETKPTYYYYGPQELLLPLLDPYRIAMEFYLKERT
Ga0209297_100198920	F019438	GAG	METILATILLGGIGFIVCGLVFIGLMHLWFWMDENERGDR
Ga0209297_10019897	F091642	AGGAG	MGSDQKFWLGIWGMVLAFLVTLAVCITINAHGKRDKWDKAVSNGADPMVAACALYSAENTGDYAICTILAQGRK