NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209297_1001798

Scaffold Ga0209297_1001798


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001798 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12270
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005740Metagenome / Metatranscriptome391N
F007361Metagenome / Metatranscriptome352N
F012111Metagenome283N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10017983F012111GGAMSERAPRRYTDGSVTFEGGVDSGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFIQKDYQTCLSITADNTLVTADQTNVTADGYSEECYSSSGLTGVFQCALPYIGDNGSTFILMLISGKVWLYDCLQNSVQNLSATPDLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATIDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQTDLLWASSAVVFDNRLLMTSQPRYNAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKTEKFDNNLSDGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPVCPLSNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE
Ga0209297_10017985F005740GAGMKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQESGYGLLGGENGACVGKQLVDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGNWIRTQSGGVWIDGEKLTLALPYVQSTKKFISLSGVIRDATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0209297_10017987F007361GGAMSVLFSLENDCIGLHEQGATDPNWQKSIENYRNRYKYVADCSTYGYLPKAIVHDSVKVYVKKDAESSAKECAERFGYEVHLPSIQMLREYADKWAASNSVMTIGEGELFKVDTLRRIWVHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRFAKEVF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.