Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1001798 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12270 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005740 | Metagenome / Metatranscriptome | 391 | N |
F007361 | Metagenome / Metatranscriptome | 352 | N |
F012111 | Metagenome | 283 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_10017983 | F012111 | GGA | MSERAPRRYTDGSVTFEGGVDSGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFIQKDYQTCLSITADNTLVTADQTNVTADGYSEECYSSSGLTGVFQCALPYIGDNGSTFILMLISGKVWLYDCLQNSVQNLSATPDLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATIDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQTDLLWASSAVVFDNRLLMTSQPRYNAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKTEKFDNNLSDGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPVCPLSNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE |
Ga0209297_10017985 | F005740 | GAG | MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQESGYGLLGGENGACVGKQLVDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGNWIRTQSGGVWIDGEKLTLALPYVQSTKKFISLSGVIRDATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF |
Ga0209297_10017987 | F007361 | GGA | MSVLFSLENDCIGLHEQGATDPNWQKSIENYRNRYKYVADCSTYGYLPKAIVHDSVKVYVKKDAESSAKECAERFGYEVHLPSIQMLREYADKWAASNSVMTIGEGELFKVDTLRRIWVHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRFAKEVF |
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