Scaffold Ga0209297_1001591

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001591
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13147
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F013186	Metagenome / Metatranscriptome	273	N
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F094950	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100159110	F037224	N/A	MHSDTLHKIQVVQAYIHHKTGKHVRIVFNNPMRVQQHLSMLDHAYLIAMGGFKNNNSNDANIGKDK
Ga0209297_100159113	F019139	N/A	MKTKTEHLGKYITMYNGNFETSFTVTEETAKDHKYYTSKGLGYLFEESTPKVKYKGVENEEKKEKDAEA
Ga0209297_100159114	F013186	N/A	MKRVLDNYISRAYPEIRAYTAYFLSKMGSYIDADTVINNSYIHVLTINDYTADEDKVKGYLLNTIKYQILWSTSKSHKDDRVTAIIDNSPDRIEDDELADKIREDRTYSFNKGLIEIYRSEIVDQVQRIVFEAYIDKGYITSRALATYFGITHTSAYYLIKELKQNLNKLQYRYETESVY
Ga0209297_10015912	F094950	N/A	MVTILGREIPNKIEELTIEQFEAITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDISDFIEIVKEFNSAQDPMAQSEPVGTLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTNTEHYAEAHLKLKSKLIRKLKAELCIPYIMFVANKIKKQVEDVPAETIEHVPTEAVE
Ga0209297_10015914	F001883	AGTAG	MGRYANTGEFNVLYPTRRRMATILKRIIRDDILNPTGSTLIDSIRINAKITGGFEVLEIQIIAAYYFIYLNNGVPQTSNQYGPNNGSIVSRDFVEKFTHELGSAGITKEIYNQYFEWLTKRYKLLDAVVVAEKNQKLVYTFEALFAPPEFIQGLPLRV
Ga0209297_10015916	F004366	AGCAG	MNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQNEKYPLVYIVPSGVVPTENTTEFNFDIYCYDIIQKDRANIITILSDTQQILSDLNVYFNTSNDFSFDVVGVPTFSPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI