Scaffold Ga0209297_1001434

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001434
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13882
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005451	Metagenome	400	Y
F010080	Metagenome	308	Y
F014136	Metagenome	265	Y
F023340	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100143410	F005451	N/A	MTNRVYPYYPSWDGKGTQPVTAKLVELCAKRWGTKSLGTYANRPMRNNAGLSVHATGYAADIQYKDEAQAREMWDWFLANSKALGLCELHWYAYGEYGAGYRCSRGEGKTGVKIYTADDNAGSYQGNPNWLHFEMTKMSAEAFEAAWRALPKP
Ga0209297_100143415	F010080	N/A	MTTNTSIEVVGLKEAIRSLNKVEPGLRKEFVAQATAIAQPAIQEVQRGYTKVPLSGMARQWQQNGKKIFPFSVARAISGVKLKVDASREATSLIYITQTNVAAAVFEAAGRANPNSLGDSLGDIRPGTTRVLGPAVFRKRKEIEREMLRASMDAIKLVQKELD
Ga0209297_10014347	F014136	GAGG	MELTTDEIIARLMNLSVKLDGEMRFDEGSTISQAIALIMTMRNAAERMRHPSMSNNDELKAVIEWITEPK
Ga0209297_10014349	F023340	N/A	MGRMLALDENDGKPLILPTWGYYPLWSKDKLTLVQIFTDPATEEIVKVTVATRRAPWMTFASITEVEQVD