Scaffold Ga0209297_1001203

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001203
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15063
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (57.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002515	Metagenome / Metatranscriptome	552	Y
F004840	Metagenome / Metatranscriptome	421	Y
F011386	Metagenome / Metatranscriptome	291	Y
F019324	Metagenome / Metatranscriptome	230	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100120313	F019324	GGA	MLGYTKEDLDQMTNAIQSAITTVNSDDDPWLHSRLYMASEFLQGLWAEGYFD
Ga0209297_100120314	F001507	N/A	MNTTHKPYTIHELVEEIYEDNFSHFDFMENMNGGDCDCNLHMTMNTILKYWGE
Ga0209297_100120321	F002515	N/A	MSQKKTPEELRILMELRRSNAASAIPNKKKYDRKKCQSYLLQLKKESE
Ga0209297_100120327	F004840	AGGA	MEYEYLITCAYDGNAPHWKQRYENEFGAWENFFLFTDWGMADEYSTVNLYTPTGKCYTRNFYRSGMVATK
Ga0209297_100120336	F048982	AGGGGG	MSIELQDTLSICRQIRNNDRDSGTHYLLGYLWANTSDKEKERIYKLFKKDFDEMENK
Ga0209297_100120339	F011386	N/A	MSGNTKNINLMTKQEVYDFIEVFQSTLHPNQRVKITCDLLCIDGYMQGDTF