Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1001021 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16532 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (48.15%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003579 | Metagenome / Metatranscriptome | 478 | Y |
F012335 | Metagenome | 281 | Y |
F013396 | Metagenome | 271 | N |
F031467 | Metagenome | 182 | N |
F051896 | Metagenome / Metatranscriptome | 143 | Y |
F101057 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_100102111 | F101057 | N/A | MANAKIVNTPSQAIPQYGAPHTQVTIGATAGAVLGSLTLNAGTTHVLVQFTGANARVTFDGTSPTTSKGFVYADGSTAYLTRNMASAAKAIRDDSTDVVLEIQELNFL |
Ga0209297_100102121 | F012335 | N/A | MPKRKISDLSKSVAANANNVGNFIERRDPALAIKALEMLAEGESFNSINKKLGMKWETVARLKARHKMALNERRASLAEDALDIVEGLRLLQKEKMRMLAEDPEQLARTNIRDLTLPWGIANDKFLSAMGENRVVVEHKTSAPSLEDAMKAIEQARANMKASSIEAVVTEIKE |
Ga0209297_10010213 | F051896 | AGGA | MNYSRNAFSDILAVVSASSSIAAWQEQLDWALRIIASLLAITAGVYSIISRRKSRNKSSN |
Ga0209297_10010214 | F031467 | N/A | MDLSTLLAGPLGGVLGLGGAIFQKWLSMKEAKDSHAMKMEELKVVSQIDLQKADINLRQTTEETNGVLFGKAIDAQAALRPSSSIVTDIISLFRPGLTLALWVSSTVLSVCYRNEQPELMNFIITSTFGMFSISVGYWFGVRTEYKMAIRNVK |
Ga0209297_10010217 | F013396 | N/A | VTLQRSLLLGLLALGLVVILALALRSERVLVNGLPPRIIVNSQVEAQEMAGALAVGVLGTGSMAPYIPSTPNGADPLKTIAAYAVVNTNLTYKDITPGALVIYSINYVKGSNTMHQAALLDASGWIMTGLGNKEYENRVRVTSNNFVGIVSKVYVWKP |
Ga0209297_10010218 | F003579 | N/A | MTIPIAPYTMGSPAQPKVGTQFEVRYINYTGVTAVADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDATFAGVLAVNAGFELPTE |
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