NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000997

Scaffold Ga0209297_1000997


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000997 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16815
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (13.33%)
Novel Protein Genes24 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Associated Families24

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F001754Metagenome / Metatranscriptome641Y
F003291Metagenome / Metatranscriptome495Y
F006547Metagenome / Metatranscriptome370Y
F007113Metagenome / Metatranscriptome357Y
F007690Metagenome346Y
F010916Metagenome / Metatranscriptome297Y
F013298Metagenome / Metatranscriptome272Y
F017485Metagenome240Y
F017998Metagenome237Y
F018001Metagenome237Y
F019478Metagenome229Y
F022886Metagenome / Metatranscriptome212N
F024555Metagenome / Metatranscriptome205Y
F025032Metagenome203N
F027416Metagenome194N
F031098Metagenome / Metatranscriptome183N
F037728Metagenome167Y
F038234Metagenome166Y
F038242Metagenome166N
F053288Metagenome141N
F054034Metagenome140N
F084228Metagenome112Y
F084236Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100099710F019478N/AMELKIKNTDRMVGTMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWVEVRKDGRMDSDGDWVYSLNYMRCNQHSITAKWFGDWKNVTKTFGDALKKQF
Ga0209297_100099712F024555N/AMLTIKNIEKLYKLNVSNWRIGKVETLNSSYLIQLKKYNSIETKQVNIERTPIGEGDTALYELWFWDDGKPIRRLLRKCDFELGPPYVIKNIENMMNLK
Ga0209297_100099713F038242N/AMLTIKNIKELELNFCHQRGLKRITETTNALGEHFYCFNFGPISDGKGWNKETEVRLGRDINQRGYQIFVMGLQMSTRYFVSIDDIKSKDGLVLAISKVLAQAKWWWENEAI
Ga0209297_100099714F007690N/AMLTIKNIDKLVNQPIWDGWEVNDIYKGGHNDTYIFELVKRKSLPMHNGLCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0209297_100099715F018001N/AMLTIGNIGDLKGAQLNDWKVLDAGEDIRAELGKNIYILTFGRLDRDGRVLDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDTIVWPAVNIRDKDVFFGRILYKINEEYYKRK
Ga0209297_100099716F084228N/AMLTIQNVTKLAGKRIFGGWVVRDMNCHPTQNKYMFDIHCMGPLGNTIDRCTVSLNRIGQLQREMGKPDYMVYFINYNGEQTKVCVTKDWILNPENFISQLKYIINEYHNKR
Ga0209297_100099717F038234N/AMLTIKNISSLKGKYIGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDRFIRFLIDELI
Ga0209297_100099718F017998N/AMNLERLDLEKYEVLELERNRTIADPLYQQWMSELGVSSSYSDREGIIRANELNNQYTYSVLAENKSTKFSVSSILSILK
Ga0209297_100099719F037728N/AMKRLKITNFTKRVMEIHSDYFMIKYCSDSGDKYLMGIDTNDVVSFKRLEPKHYKMAIDKAPNEDGNYHIWLWDMESNISYPMSIDRDELSNSSTFTKFLNHMLKLANNGDFSGDTGNRVD
Ga0209297_10009972F025032N/AMEGESNVDKFTFKQKDAGGVRPSYQNTKLVKQGTSKDYVKYNVMVMGKFGGTIYYNKTDKSIIASGGESNTTFAPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0209297_100099721F031098N/AMKTYYDIAIHTATKDVVTIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR
Ga0209297_100099723F010916N/AMVVDTIKSDLYNLIQKHDWSYMMSDSHSVWEAGMIEDKEIQAKIHALIGIHREDADELYVFIKYMAGSDYTDSDKNGNGLKYRVINSWFKPYIGEVK
Ga0209297_100099725F007113N/AMKIRLELTPEQLKTVEIALCELFNSDGWTWHRSMEENDKIADRAQYLLHVIESYNKNNKK
Ga0209297_100099726F003291N/AMSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVIARGNGKMGVAEYKMSEAQLDAMYESDVRAHS
Ga0209297_100099727F001754GGTGGMTLSLCSKGDGKIPPYQMIKNYNMNTIYNNFAPSKMSNNPKFSVMVEFTDFLGNQHRIVCNNRRKLAEANEFLKMFKTESTKINKILGEYPVVMGQFPKKYHKEIKMELASAGFGSVSKFLIK
Ga0209297_100099732F013298N/AMNIREFYVKNYPSDDMGKGINPEATFDGLVHALSNCQDVYEYLYVYDSIIRERLFEKLSLILNCEYEVIYQRWLSPIKKPLIKK
Ga0209297_100099734F000785N/AMKFDCTRLMRWAEEKLGPSKCTAIAFTWESDEESCGWYDWDETIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK
Ga0209297_100099739F017485N/AMNNELKRKDILEGITFILMIVATLGMFCLLYEVTELRELTKSASNFRTIRK
Ga0209297_100099740F054034GGAMLTISTFKKLEGLVLMDGLKVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTSAMTEFISIKTINTLDRMREQLIYIKEKYKTK
Ga0209297_100099741F084236AGGMLTINNQYKIVAESFVVSKNGLNEHWVVDDITETPYVYHIRVLRKVGIFDTIERTIRVNREKNKLEMYSVHITAAGHIIDKDQIRVGNIQTTEGMLNELKTIMEFI
Ga0209297_100099742F027416N/AMLTIENIQKLEGLKVGANGKVWKIIRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIKRAVERQDMVDVYNFLRLIKKEIERAVC
Ga0209297_10009975F022886GGAMITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHRGEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVKV
Ga0209297_10009976F053288N/AMITIQNYNSDVGHGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLIHRNKLKSKKRAKHFPISGDLHEVYIQDMVSDKWRRTVNLAKTSLNKSAFYNWVESVIDDEYGLPF
Ga0209297_10009978F006547N/AMKWIFIFLFPVLVSAQIYDTTYQMIYYQKSLIKKGKVELYGYTSYDLWWADESGIGLLYTLPNRRKKKTKRK

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