Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1000837 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18830 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (58.33%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004362 | Metagenome / Metatranscriptome | 442 | Y |
F006502 | Metagenome / Metatranscriptome | 371 | Y |
F022814 | Metagenome | 212 | Y |
F041636 | Metagenome | 159 | Y |
F057002 | Metagenome | 137 | Y |
F063629 | Metagenome | 129 | N |
F079388 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_100083711 | F004362 | N/A | MTNMESRLKNWAWYVTWGVIGPQVDTTCRSFEKNYVPELGNLYADPEPHYEPDHVDGDLIEQAIKGLPLQLRQVLKMRYVSHPYASLNQLAHNARTTPHKLETDLHNAKKRLQHELDKKSKSNHYQSLCKVQAQKNN |
Ga0209297_100083713 | F022814 | AGGA | MKLNSEVVKNLYASLYCCYPFTKWKMPLPEEIEFIVTPDPEVMGTYLYDTGEDYEHTVTISSGRCGHYYTMLTTLAHEMVHMSFHRQEGNKWTQHGKPFRTRCKIVANELGFDPLEL |
Ga0209297_100083722 | F063629 | AGGAG | MNTVVNTPQTSSFDRLMAEFGTIKTLCEKIGVKYVTAYAWKMRNGIPKKWHKSIIEASEGRLTENDLG |
Ga0209297_100083726 | F079388 | N/A | MEKTKVINKKCLEAFNSLSEPVYHPQEYFMLGWNAAIDALSAEFSRKWEMSELEDIDFIVHPEQEPMHDDE |
Ga0209297_100083730 | F057002 | N/A | MRSALTFTKESLHPSDYAGKRFDQALHDKYDPPARKAVTDWMKMKWGLECRENPNVYGVDLIAYREGNLVGFVEVEVRSWSFCHHPTIHIAHRKAKLFQQDRPVLFFALTHDLSHAYWMKAKLVKECPLVEVKNREVPSGEFFFDVPVGHFKYVDLTDPF |
Ga0209297_100083733 | F041636 | N/A | MANLTEKEIEDIVEKVTERVIENVYTSVGRSVVTKLFWTVGVAAIGVVTYLAGVGHIKIG |
Ga0209297_10008378 | F006502 | N/A | MKPQKTTIMIGLLGDKPKMGKKEEGGLLAEDKSSCPLATQDADINKGNMKKAILTANYGEKGDGEGKCKACEYFCTPKEMPDCGLEKTMGYCEIYDFMCNQNNGCDAWEAIGKEEEMEMEDEE |
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