NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000837

Scaffold Ga0209297_1000837


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000837 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18830
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004362Metagenome / Metatranscriptome442Y
F006502Metagenome / Metatranscriptome371Y
F022814Metagenome212Y
F041636Metagenome159Y
F057002Metagenome137Y
F063629Metagenome129N
F079388Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100083711F004362N/AMTNMESRLKNWAWYVTWGVIGPQVDTTCRSFEKNYVPELGNLYADPEPHYEPDHVDGDLIEQAIKGLPLQLRQVLKMRYVSHPYASLNQLAHNARTTPHKLETDLHNAKKRLQHELDKKSKSNHYQSLCKVQAQKNN
Ga0209297_100083713F022814AGGAMKLNSEVVKNLYASLYCCYPFTKWKMPLPEEIEFIVTPDPEVMGTYLYDTGEDYEHTVTISSGRCGHYYTMLTTLAHEMVHMSFHRQEGNKWTQHGKPFRTRCKIVANELGFDPLEL
Ga0209297_100083722F063629AGGAGMNTVVNTPQTSSFDRLMAEFGTIKTLCEKIGVKYVTAYAWKMRNGIPKKWHKSIIEASEGRLTENDLG
Ga0209297_100083726F079388N/AMEKTKVINKKCLEAFNSLSEPVYHPQEYFMLGWNAAIDALSAEFSRKWEMSELEDIDFIVHPEQEPMHDDE
Ga0209297_100083730F057002N/AMRSALTFTKESLHPSDYAGKRFDQALHDKYDPPARKAVTDWMKMKWGLECRENPNVYGVDLIAYREGNLVGFVEVEVRSWSFCHHPTIHIAHRKAKLFQQDRPVLFFALTHDLSHAYWMKAKLVKECPLVEVKNREVPSGEFFFDVPVGHFKYVDLTDPF
Ga0209297_100083733F041636N/AMANLTEKEIEDIVEKVTERVIENVYTSVGRSVVTKLFWTVGVAAIGVVTYLAGVGHIKIG
Ga0209297_10008378F006502N/AMKPQKTTIMIGLLGDKPKMGKKEEGGLLAEDKSSCPLATQDADINKGNMKKAILTANYGEKGDGEGKCKACEYFCTPKEMPDCGLEKTMGYCEIYDFMCNQNNGCDAWEAIGKEEEMEMEDEE

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