Scaffold Ga0209297_1000592

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000592
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22670
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F007170	Metagenome / Metatranscriptome	356	N
F009888	Metagenome / Metatranscriptome	311	N
F012219	Metagenome / Metatranscriptome	282	Y
F016153	Metagenome	249	N
F056616	Metagenome / Metatranscriptome	137	N
F066791	Metagenome	126	N
F103260	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100059210	F012219	AGGTGG	MNLQNFYIQKEPAPSTDWRVFGDIEDDAGNILGTFGIDGTSVNQWWVTQDEDFQYGIVQQFAVIMAQQIISGDAE
Ga0209297_100059213	F009888	AGG	VALIFDLTEDPQQIVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNINTGAAYSFVSGSVTLTKQYSAQGIMSVLNPAAYPTAANIRLTVSFTVSTTVRRFGPLEIEVLAP
Ga0209297_100059215	F007170	AGG	MAFEPAVIEQWIYETLSGDTTLMDLLSTSNQPSGYQQGIYNTVAPQVDPVSRRPPQLPYVVFSRAGASGDDEDALCGARVFTFPNYRITVWDSESGAMSMSGIQTIMSRVDTLLDNQTVTSTTPRLYVRRTSTDQTFSLSDGGRTDYGVTAVYRCLTQQ
Ga0209297_100059216	F056616	AGGAG	MAFTKSFGLVGENCVVTIAFGGFQDGSPTAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSIDIELLVDGTQQADGSPIFFNKEGYYCQVVITPGALSAKTFVGIVTATGIGIAAGEAVTETATIMLGANGVTTAWATA
Ga0209297_100059217	F103260	N/A	MGIKAIKAVAPEVEHGILEVNLSEWAGEGAIVKFRQPKAADYFPDATELQKIRMSYAEMAPNLLVNCLIIGKCYVPDMDDPSDAAFIRVLLDLSRKNTQAFYAIYWSFIGKYIDVSVTKEVDEAKNDSAV
Ga0209297_100059220	F066791	GGA	MQIRASGDYYLQSLNITERATLTTAFSANQAVYLSLYVPGLKDTDKSIILKCGWGVGAAGSVEVWFAANGSAQVFKSGVVVGTYERGDSNIAPAVGAQTSKSSRSDFIGIMMIPARRRELLVTTSDGTNFSHVFEDLDPGIQNNILPAAAFSWLVPTGQATVQLAKCNFETSGYVLSQVKALRYPPPVGATFSPTYAGDNVGFGAYTFTGSVVKSDGTAYTPNGAIKDVRLKVALTGAGTGSLGLYSAEGVYDATIGATYNGTVDVTQYIQSLSMAVDEDGKATCTIGAIAKPLIDAGIQQANVTSDRPVRIALGDGPAVYPGVVTYKDIFRGTLQPPKIKFLDRDTTASWATYVYSGTDRSRDFDLAWLVESYPYDGILAINAIIDLMLIAGYDANIYYGGSTPDQELPYTSNISKGQYTLAPDYGDTVASYLDKIKQEYYATWITGWMPTASGYLYQWLDVNAASTASTMTLYQSISTATTAGVAEELRPQRVIRSLNSYNEEAECTQVTVIGQDPNTGKFIPYTQIDSAAEIAATAPASRPRNWRGRPVCYQFRDPALNTLDAVTAACLMLYTRLTTGRTMIEFDATFLVYNVSNRPVWLGDVIKLMDTDGVGVLGNYRIIAIPSIEFVQENTVGSSTLFNVRKASYRAVYVSAGT
Ga0209297_100059224	F016153	GGAG	MTVVEEVYTMERLEDVLKHGHTTFENVELDFSSVWNEALGAWQYQRSLRCTIHNIARMLWFTTCKGELLSVVYSSGGVDIHIDVEQFTMGAPSDWQIKSWIGDMAKELMP
Ga0209297_10005929	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLAELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVGVNALKVGK