NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000453

Scaffold Ga0209297_1000453


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000453 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26559
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (80.39%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009140Metagenome / Metatranscriptome322Y
F012211Metagenome / Metatranscriptome282N
F032955Metagenome178Y
F034109Metagenome175N
F044456Metagenome / Metatranscriptome154Y
F046258Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100045325F044456AGGMELLYSRMGNEGGYVIETIITIFALGFLGIALAIGGVCLIVWMALNES
Ga0209297_100045333F046258GGAGMKHLTIAIKRVLSYFEIVTLQPSLPILLRDKTPAKKTLPTLAITDPKFVYQSAACTDISQTFEKAKHERLQRLRNDVDDNRKQNQGTEQQMPVKKLRRVHG
Ga0209297_100045334F012211AGGAGMPTDEERFNYECYAIVQELDPEDISDAIDDSVALVEAIKANNAEDVAAIVMHRVELKVCRRAELRVFDVVKTPWVDDIEELQHYRNLRIERVQKALDERKITAAKMDAPFKEMFDE
Ga0209297_100045335F009140GGAGMRLNQTHRTILKRLSGGPRSMLDMTHSATDNNAVSYHYAKYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEIYDGKELRRNVQRRGCYDFLKYPSRFSDNRIYRV
Ga0209297_100045339F032955AGGAGMNKDEAHHLLNKRKQGFAVPLYIVNRALLVSGDLGMACTPCKTTGLEGSGMAQGEGTGVMPDSLMAWNNNRFDEPHESPI
Ga0209297_100045342F034109GAGMANKINPNRTQTDFKLDLSPEQRAILELIGGGNMTQGLKVAIDQAGHFFNCGLDPEMNLNYVGLVTTLPNQDDD
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