NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000261

Scaffold Ga0209297_1000261


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000261 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35310
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (82.81%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F007848Metagenome343Y
F024029Metagenome207Y
F027399Metagenome194Y
F027764Metagenome193Y
F029048Metagenome / Metatranscriptome189Y
F046243Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100026120F046243AGGAMKHMTRSYPPEDAMLRPHKESTLEKQQKKRQEHNPPLELDDSGILNKKANERMKRKEALSKAMNKYHDPDIVG
Ga0209297_100026135F007848AGGGGGMKDFIGACLLGGLLGAMLGFGIAEAQTIQLNDSRGYSMGTVQINGNTAQFVNPMGITTQTATMYPNQVVITTPNGYTQSVVGNPGYTVPPNPPTPSSPRVLQ
Ga0209297_100026138F007166GGAMGELNQLMLEMEERLEIALDNMEYGTDLSADDIDVIRAACGKPKRNVLLQSVFDDFGNVFGGQNATK
Ga0209297_100026141F029048AGGAGMLSHIKDVIGDKAIVSTEPFGVDEERQLIAFEVNDLAAVLRDVIQTCADCCISATDREAILELLN
Ga0209297_100026146F027764GAGGMQIQLQIIKEHEDGSADALVHFDAEGLGILVETGILSILRQYIEQEKKAKKGKK
Ga0209297_100026148F024029GGAGMNDHIWTASGTDITVRWKLYGYVPPSELPEYQAKWKHFQELPLRKLDDQAKKEYELVLKKAKVVRIR
Ga0209297_100026154F027399GGAGGMNFTFTWILDKFGFQPKIEIEPIKKPVAPKPVAKKVAKKTVPKATTRKPKAK
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